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    Home » Breads » Muffins

    Lemon Poppy Seed Muffins

    By Elizabeth Waterson // Mar 1, 2020 (Updated Dec 27, 2025) // 5 Comments

    Jump to Recipe· 3.7 from 3 reviews
    This post may contain affiliate links, which may pay me a small commission for my referral at no extra cost to you! Thank you for supporting Confessions of a Baking Queen!

    196 shares
    half eaten lemon poppy seed muffin on a wire rack

    Tender, moist, and fluffy lemon poppy seed muffins are the perfect breakfast treat. Brushed with a lemon glaze these muffins are bursting with lemon flavor.

    lemon poppyseed muffin half eaten in a bowl of more muffins

    Anytime I can have a muffin, aka like a mini cake, for breakfast, I am in. While lemon is a favorite ingredient of mine (check out my lemon recipes) I have never published a lemon muffin recipe. So I thought to myself why stop at plain lemon? And lemon poppy seed muffins were born.

    Another reason I adore a muffin recipe is how quickly the batter comes together and also how quickly they bake. Basically, you can be enjoying these babies in just about 30 minutes.

    Let's get to the muffin recipe.

    close up of a lemon poppy seed muffin in a bowl of muffins

    What are the ingredients

    Most muffin recipes call for pantry and fridge staples, the only difference here is you'll also need poppy seeds. For the full recipe you'll need:

    • Sugar. Just good ol' granulated or caster.
    • Lemons. We'll use the lemon for two parts, the lemon zest, and lemon juice.
    • Full-Fat Yogurt. You could use plain or Greek yogurt.
    • Eggs. Make sure they are at room temperature, to do this quickly place the eggs in a bowl of warm water for 5-10 minutes before you crack them.
    • Butter. No waiting for it to soften just use melted and slightly cooled butter.
    • Flour. All-purpose or plain flour.
    • Poppy Seeds.
    • Baking Powder and Baking Soda. The chemical leaving agents help the muffins rise.
    • Salt. Just a pinch balance everything out and brighten all the flavors.

    The muffins are great as is but I really love the lemon flavor so I find adding a little lemon glaze, just like I do in my lemon pound cake, makes all the difference! You'll only need fresh lemon juice and sugar.

    How do you make the muffins

    Stary by preheating your oven, we'll start the muffins at a higher temperature to encourage them to rise higher, then reduce the oven temperature to continue the baking.

    The most important piece of equipment when I make anything with lemon is a good zester. This Microplane zester makes zesting a lemon feel like butter. It was one of my best investments!!

    microplane zester full of lemon zest

    To start you'll mix the sugar and zest together. Doing this helps the lemon oils from the zest rub into the sugar, infusing all of the sugar for a really great lemon flavor. You can do this in a large bowl with a handheld electric mixer or bowl of an electric stand mixer and just mix for a few minutes.

    lemon zest and sugar mixed together in a metal bowl

    Add in yogurt, eggs, lemon juice, and melted butter, mix just until combined, making sure to scrape down the sides of the bowl to ensure everything is fully combined.

    wet ingredients for lemon muffins

    In a separate large bowl whisk together the flour, poppy seeds, baking powder, baking soda, and salt.

    flour, poppy seeds, salt, baking powder and soda in a glass bowl
    hand holding a whisk mixing dry ingredients for lemon poppyseed muffins

    Gently fold in the dry ingredients into the wet ingredients, just until no major flour streaks remain. Over mixing will overdevelop the gluten producing a tougher muffin.

    hand holding a sptaula gently folding dry ingredients into the wet ingredients
    lemon poppy seed muffin batter in a metal bowl

    Using a large cookie scoop to scoop the muffin batter to each individual muffin cup.

    lemon poppy seed muffin in a muffin tin before baking

    Bake the muffins for 6 minutes then reduce the temperate to 325F/163C and bake for an additional 9-11 minutes, or until a toothpick inserted in the center comes out with no wet batter, moist crumbs are okay.

    While the muffins are baking prepare the lemon glaze.

    lemon poppy seed muffins cooling on a wire rack next to a cup of coffee

    In a medium pot over low heat cook the sugar and lemon juice, stirring frequently. Cook the glaze over medium heat for about 5 minutes, the mixture should bubble up, all the sugar should melt into the lemon juice. Take off the heat and let cool for 10 minutes, the mixture should have slightly thickened.

    lemon syrup in a small pot

    When muffins are baked place on a wire rack to cool for 5 minutes before removing from the muffin pan. Place muffins on a wire rack and use a pastry brush to brush the top of the muffin with the lemon glaze.

    hand holding a lemon poppy seed muffin with a pastry brush putting lemon glaze on

    If you're craving some more lemon deliciousness try my lemon curd loaf cake, Lemon Zucchini Cake, or my French Lemon Cream Tart.

    half eaten lemon poppy seed muffin on a wire rack

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    ★★★★★ Please let me know if you make this recipe by leaving a star rating and comment below!

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    Recipe Card

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    half eaten lemon poppy seed muffin in a white bowl

    Lemon Poppy Seed Muffins

    5 Stars 4 Stars 3 Stars 2 Stars 1 Star

    3.7 from 3 reviews

    Print Recipe
    Pin Recipe

    Tender, moist, and fluffy lemon poppy seed muffins are the perfect breakfast treat. Brushed with a lemon glaze these muffins are bursting with lemon flavor.

    • Total Time: 28 minutes
    • Yield: 14 Muffins 1x

    Ingredients

    Units Scale

    Muffins

    • 2oo Grams (1 Cup) Granulated/ Caster Sugar
    • 1 ½ Tablespoons Lemon Zest
    • 12oz (1 ½ Cups) Full-Fat Yogurt
    • 2 Large Eggs, at room temperature
    • 2oz (¼ Cup) Fresh Lemon Juice
    • 4oz (½ Cup) Butter, melted and slightly cooled
    • 375 grams (3 Cups) All-Purpose/ Plain Flour
    • 3 Tablespoons Poppy Seeds
    • 1 Tablespoon Baking Powder
    • ½ Teaspoon Baking Soda
    • ½ Teaspoon Salt

    Lemon Glaze

    • 50 grams (¼ Cup) Granulated/ Caster Sugar
    • 2oz (¼ Cup) Fresh Lemon Juice

    Instructions

    Muffins

    1. Preheat the oven to 400F/204C and lightly grease a 12-cup muffin pan, set aside.
    2. In a large bowl with a handheld electric mixer, or bowl of an electric stand mixer, beat the lemon zest and the sugar for 3 minutes. Add in yogurt, eggs, lemon juice, and melted butter, mix just until combined, making sure to scrape down the sides of the bowl to ensure everything is fully combined.
    3. In a separate large bowl whisk together the flour, poppy seeds, baking powder, baking soda, and salt.
    4. Gently fold in the dry ingredients into the wet ingredients, just until no major flour streaks remain. Over mixing will overdevelop the gluten producing a tougher muffin.
    5. Using a large cookie scoop add the batter to each individual muffin cavity. Bake for 6 minutes then reduce the temperate to 325F/163C and bake for an additional 9-11 minutes, or until a toothpick inserted in the center comes out with no wet batter, moist crumbs are okay. While the muffins are baking prepare the lemon glaze.
    6. In a medium pot over low heat cook the sugar and lemon juice, stirring frequently. Cook the glaze over medium heat for about 5 minutes, the mixture should bubble up, all the sugar should melt into the lemon juice. Take off the heat and let cool for 10 miuntes, the mixture should have slightly thickened.
    7. When muffins are baked place on a wire rack to cool for 5 minutes before removing from the muffin pan. Place muffins on a wire rack and use a pastry brush to brush the top of the muffin with the lemon glaze. Store leftovers in an air-tight container for up to 3 days.

    Equipment

    kitchen aid cordless hand mixer

    Cordless Hand Mixer

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    muffin pan

    Muffin Pan

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    oxo food scale

    OXO Kitchen Scale

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    Notes

    Recipe Muffin Recipe Adapted from Cooks Country 

    • Author: Elizabeth Waterson
    • Prep Time: 10
    • Cook Time: 18
    • Category: Breakfast
    • Method: Bake
    • Cuisine: American

    Did you make this recipe?

    Tag @confessionsofabakingqueen on Instagram and hashtag it #cbqbakes

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    Reader Interactions

    Comments

      Leave a comment & rate this recipe Cancel reply

      If you love this recipe, please consider leaving a ⭐ star rating ⭐ when you post a comment. Star ratings help people discover my recipes online. I am incredibly grateful for your support! —xx Liz

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    1. Tee says

      May 08, 2020 at 1:13 pm

      These were okay. Not as light and fluffy as I hoped.

      Reply
      • Elizabeth Waterson says

        May 08, 2020 at 2:10 pm

        Hi Tee, I am so sorry you didn't enjoy them as much as I do. Thanks for coming back to review the recipe. Take care. XX Liz

        Reply
    2. Michelle says

      August 10, 2021 at 10:50 am

      These muffins were not as sweet as I expected and I had to bake almost 5 minutes more than the recipe called for but overall an easy recipe and I am enjoying them. Don’t skip the glaze, it totally saves the muffins, IMHO.

      Reply
    3. Rachel says

      May 27, 2022 at 6:19 pm

      These were so fluffy and delish! Cannot wait to make them again!

      Reply
      • Elizabeth Waterson says

        May 29, 2022 at 8:20 pm

        Hi Rachel, thank you so much for the lovely review, so happy you enjoyed the muffins!! Take care. XX Liz

        Reply

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    Hiya! I am Elizabeth Waterson, welcome to my treat-filled site. After spending 15 years in the restaurant industry and growing up baking, I wanted to share my love of baking with you all. My step-by-step tutorials will help you learn how to bake at home. Confessions of a Baking Queen (CBQ) has been featured in CBS LA, HuffPost Taste, BuzzFeed, Taste of Home, and more! Here you will find loads of sweet recipes with a few savory ones for good measure. Feel free to message me with any questions! Happy Baking! 

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